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-rw-r--r-- | SPLC.pl | 34 |
1 files changed, 34 insertions, 0 deletions
@@ -0,0 +1,34 @@ +#!/usr/bin/env perl +use strict; +use warnings; +use 5.016; + +my %map = qw( + UUU F CUU L AUU I GUU V + UUC F CUC L AUC I GUC V + UUA L CUA L AUA I GUA V + UUG L CUG L AUG M GUG V + UCU S CCU P ACU T GCU A + UCC S CCC P ACC T GCC A + UCA S CCA P ACA T GCA A + UCG S CCG P ACG T GCG A + UAU Y CAU H AAU N GAU D + UAC Y CAC H AAC N GAC D + UAA Stop CAA Q AAA K GAA E + UAG Stop CAG Q AAG K GAG E + UGU C CGU R AGU S GGU G + UGC C CGC R AGC S GGC G + UGA Stop CGA R AGA R GGA G + UGG W CGG R AGG R GGG G +); + +chomp(my $dna = <>); +chomp(my @introns = <>); + +for my $intron (@introns) { + $dna =~ s/$intron//g; +} + +$dna =~ tr/T/U/; + +($_ eq 'Stop' && last) || print for map { $map{$_} } $dna =~ /.../g; |